PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06927.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 190aa    MW: 22059.5 Da    PI: 4.8005
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06927.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1163.7e-3631231128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+ ae ++wyf+s+r +        +r+t++gyWk+ 
  Sme2.5_06927.1_g00006.1   3 LPPGFRFYPTDEELVVHFLHRKATLLPCHP-DVIPDLNLYPYDPWHLDGKAMAEGNKWYFYSRRTH--------SRITENGYWKSL 79 
                              79*************************999.99**************977778899******9865........699********* PP

                      NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g +++++s+  ++++ g+kk  +fy g+ p+g+kt+Wvm+e++l
  Sme2.5_06927.1_g00006.1  80 GVEEPIFSTdnNNNNLGMKKYYAFYIGEPPEGVKTNWVMQEFSL 123
                              *******99777778***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-461156IPR003441NAC domain
PROSITE profilePS5100544.7133157IPR003441NAC domain
PfamPF023651.8E-214123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MNLPPGFRFY PTDEELVVHF LHRKATLLPC HPDVIPDLNL YPYDPWHLDG KAMAEGNKWY  60
FYSRRTHSRI TENGYWKSLG VEEPIFSTDN NNNNLGMKKY YAFYIGEPPE GVKTNWVMQE  120
FSLNSDSSSG TSRSSSKRRT RSKIDYSGWV ICRVYERNFD NDDDDGGPEL SCLDEVFLSL  180
DDLDEISLPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B5e-36115815166NAC domain-containing protein 19
4dul_A5e-36115815166NAC domain-containing protein 19
1ut7_B5e-36115815166NO APICAL MERISTEM PROTEIN
1ut7_A5e-36115815166NO APICAL MERISTEM PROTEIN
1ut4_B5e-36115815166NO APICAL MERISTEM PROTEIN
1ut4_A5e-36115815166NO APICAL MERISTEM PROTEIN
3swp_D5e-36115818169NAC domain-containing protein 19
3swp_C5e-36115818169NAC domain-containing protein 19
3swp_B5e-36115818169NAC domain-containing protein 19
3swp_A5e-36115818169NAC domain-containing protein 19
3swm_D5e-36115818169NAC domain-containing protein 19
3swm_C5e-36115818169NAC domain-containing protein 19
3swm_B5e-36115818169NAC domain-containing protein 19
3swm_A5e-36115818169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755133e-82HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083878.11e-105PREDICTED: NAC transcription factor ONAC010
SwissprotQ8GWK67e-83NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0V0HHT61e-111A0A0V0HHT6_SOLCH; Putative NAC transcription factor 25-like
STRINGPGSC0003DMT4000764811e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-81xylem NAC domain 1